Small Sample Properties of Rank Tests for Incomplete Unbalanced Designs

A rank test is presented for analysis of incomplete unbalanced designs, i.e. for designs that may have been originally planned to be either balanced or unbalanced and where some observations may be missing at random. This test is a modification of the procedure of Benard and van El-teren (1953) based on a generalization of block weights proposed by Prentice (1979). It is compared with the tests of Haux, Schumacher, and Weckesser (1984) and Rai (1987). For incomplete or unbalanced designs with more than two treatments the quadratic forms proposed by these authors are proven to be invalid for small sample sizes, except for special cases. A necessary condition is given for test statistics to be valid also for small samples.     

Functional morphology of the spiracles in two species of Argasidae (Metastigmata: Acarina), with particular reference to responses to desiccation

Spiracle morphology of Argas persicus (Oken) and Omithodorus acinus Whittick is described and the differences between the two species are related to biological factors. Argasid and ixodid spiracle structures and functions are compared.     

The reactivity of lactyl-oxythiamin implies the role of the amino-pyrimidine in thiamin catalyzed decarboxylation

It has previously been established that the deprotonated amino substituent of the pyrimidine of thiamin diphosphate (ThDP) acts as an internal base to accept the C2H of the thiazolium in ThDP-dependent enzymes. The amino group has also been implicated in assisting the departure of the aldehydic product formed after loss of CO₂ from ketoacid substrates. However, the potential role for the pyrimidine amino group in the key decarboxylation step has not been assessed. Oxythiamin contains a hydroxyl group in place of the pyrimidine amino group in thiamin, providing a basis for comparison of reactivity. Lactyl-oxythiamin (LOTh), the conjugate of pyruvic acid and oxythiamin was prepared by condensation of ethyl pyruvate and hydroxyl-protected oxythiamin followed by deprotection and acidic hydrolysis of the ethyl ester. The rate constants observed for the decarboxylation of LOTh in neutral and acidic solutions are about four times smaller than those for the corresponding compound that contains the amino group, lactylthiamin. The difference in reactivity is consistent with the amino group’s participation in facilitating the decarboxylation step by allowing a competitive addition pathway that produces bicarbonate and has implications for the corresponding enzymic reaction.     

Structural and functional analysis of the reducing side of photosystem I

Structural analysis of the reducing side of photosystem I (PSI) has been carried out using chemical cross-linking and monospecific antibodies. Incubation of PSI isolated from barley (Hordeum vulgare L.) with the hydrophilic cross-linking agent N-ethyl-3-[3-(dimethylamino) propyl]-carbodiimide leads to cross-linking of the PSI-D subunit with the PSI-E and PSI-H subunits. In the presence of ferredoxin, cross-linking results in the formation of cross-linked products composed of PSI-D, PSI-E and ferredoxin and in a block in steady state NADP⁺ photoreduction. No cross-linking of ferredoxin occurs at elevated ionic strength or using heat-denatured ferredoxin. Cross-linking of ferredoxin does not inhibit electron transfer from plastocyanin to methyl viologen. Steady state NADP⁺ photoreduction was analyzed in PSI or thyla-koids incubated with antibodies against individual PSI subunits. Incubation with antibodies against PSI-C, -H, -I, or -L had no effect on PSI activity, whereas antibodies against PSI-D or PSI-E had similar effects and caused a large decrease in activity. The results provide evidence that the PSI-D and PSI-E subunits are localized on the reducing side of PSI, forming a barrier between PSI-C and the stroma as well as a docking site for ferredoxin. The PSI-H subunit has an exposed, stromal domain but this does not appear to contribute to the ferredoxin docking.     

Using species traits to assess human impacts on near shore benthic ecosystems in the Canadian Arctic

Human activities have the potential to alter the diversity and composition of biological communities in natural environments, which can cause changes in ecosystem functioning. This has led to the development of environmental assessment techniques that take into account species identity, as species can contribute differently to various ecosystem processes. Biological Traits Analysis (BTA) is used to compare the abundances of specific biological traits in samples to produce information about how ecosystem functioning may change across a specific terrestrial or aquatic system. In the present study, BTA was used to assess the influence of municipal wastewater effluent on benthic marine communities in near shore soft sediments in four locations across the Canadian Arctic Territory of Nunavut, Canada. Shifts in trait composition were assessed relative to indicators of sediment enrichment (sediment chlorophyll, organic content, degree of anoxia), and natural variation in habitat characteristics (water depth, porosity, average grain size) at a site receiving wastewater and a reference site in each sampling location. The results indicated a mild enrichment effect of wastewater, as evidenced by changes in trait composition at three of the four sites that received wastewater inputs. However, the amount of variance in trait composition explained by metrics of wastewater enrichment in these locations were generally equal to or lower than the amount of variance explained by sediment characteristics related to natural processes. These results provide greater insight into the underlying causes and consequences of human activities than more traditional methods for environmental impact assessment, and can be directly applied in a management context.     

Sexual dimorphism in the tooth-crown diameters of the deciduous teeth

Mesiodistal and buccolingual crown dimensions of the right deciduous teeth of 133 white children were analyzed for information on sexual dimorphism and sex discrimination using discriminant analysis. Even though consistent differences were found for only 15 out of 20 paired measurements, five of them significant at p = 0.05 or better, discriminant analysis showed the possibility of correctly sexing up to 75% of the juvenile sample, using a maximum of seven deciduous teeth.     

The impact of elevated CO2 and global climate change on arbuscular mycorrhizas: a mycocentric approach

Arbuscular mycorrhizal (AM) symbioses are a potentially important link in the chain of response of ecosystems to elevated atmospheric [CO₂]. By promoting plant phosphorus uptake and acting as a sink for plant carbon, they can alleviate photosynthetic down-regulation. Because hyphal turnover is likely to be fast, especially in warmer soils, they can also act as a rapid pathway for the return of carbon to the atmosphere. However, most experiments on AM responses to [CO₂] have failed to take into account the difference in growth of mycorrhizal and non- mycorrhizal plants; those that have done so suggest that AM colonization of roots is little altered by [CO₂], although this issue remains to be resolved. Very little is known about the effects of other factors of global environmental change on mycorrhizas. These issues need urgent attention. It is also necessary to understand the potential for the various AM fungal taxa to respond differentially to environmental changes, including carbon supply and soil temperature and moisture, especially because of the differential abilities of plant and fungal species to migrate in response to changing environments. Indeed, there is a need for a new approach to the study of mycorrhizal associations, which has been too plant-centred. It is essential to regard the fungus as an organism itself, and to understand its biology both as an entity and as part of a symbiosis.     

Isometric and Eccentric Force Generation Assessment of Skeletal Muscles Isolated from Murine Models of Muscular Dystrophies

Critical to the evaluation of potential therapeutics for muscular disease are sensitive and reproducible physiological assessments of muscle function. Because many pre-clinical trials rely on mouse models for these diseases, isolated muscle function has become one of the standards for Go/NoGo decisions in moving drug candidates forward into patients. We will demonstrate the preparation of the extensor digitorum longus (EDL) and diaphragm muscles for functional testing, which are the predominant muscles utilized for these studies. The EDL muscle geometry is ideal for isolated muscle preparations, with two easily accessible tendons, and a small size that can be supported by superfusion in a bath. The diaphragm exhibits profound progressive pathology in dystrophic animals, and can serve as a platform for evaluating many potential therapies countering fibrosis, and promoting myofiber stability. Protocols for routine testing, including isometric and eccentric contractions, will be shown. Isometric force provides assessment of strength, and eccentric contractions help to evaluate sarcolemma stability, which is disrupted in many types of muscular dystrophies. Comparisons of the expected results between muscles from wildtype and dystrophic muscles will also be provided. These measures can complement morphological and biochemical measurements of tissue homeostasis, as well as whole animal assessments of muscle function.